| No. | Name of the project, funded by, year, project leader |
| 1. | Optimization and Performance Enhancement of Complex Networks Using Sensors, Department of Navy-Office of Naval Research, USA, 2010-2013, L. Kocarev. |
| 2. | Enhancing the scientific study of early autism: A network to improve research, services and outcomes, EU/ESF COST, 2010-2014, J. Pop-Jordanov. |
| 3. | Neuronal Electricity and Neurofeedback, TUBITAK, 2009-2011, J. Pop-Jordanov. |
| 4. | Consciousness: A Transdisciplinary Integrated Approach (CATIA) EU/ESF COST, 2007-2011, J. Pop-Jordanov, L. Kocarev. |
| 5. | Advanced Methods for the Estimation of Human Brain Activity and Connectivity, EU/ESF COST, 2007-2011, J. Pop-Jordanov. |
| 6. | Diagnosing Vulnerability, Emergent Phenomena, and Volatility in Man-made Networks, EU FP6, 2007-2010, Lj. Kocarev. |
| 7. | Upgrading the research capacities for safety and health effects of human exposure to electromagnetic fields (SAFE-EMF), EU FP6, 2007-2009, L. Grcev, N. Pop-Jordanova. |
| 8. | Communication Network Data Analysis, Hungarian Government, 2006-2010, Lj. Kocarev. |
| 9. | Electric Neuronal Oscillations and Cognition (ENOC), EU/ESF COST, 2005-2009, J. Pop-Jordanov. |
| 10. | Chaos Synchronization and Analyses of Experimental and Clinical Data, NATO, 2001-2003, J. Pop-Jordanov. |
| 11. | Bioinformatics and Neurofeedback, Sarafov Donation, 2001-2007, J. Pop-Jordanov. |